PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g05290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 204aa    MW: 23571.8 Da    PI: 10.305
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g05290.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP45.32.4e-1465934977
                     EEETTT--SS--S-STTTT-------S-- CS
              SBP 49 fhelsefDeekrsCrrrLakhnerrrkkq 77
                     fh +sefD++krsCrrrLa+hnerrrk++
  Vradi09g05290.1 65 FHVVSEFDDSKRSCRRRLAGHNERRRKSS 93
                     9**************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114110.938392IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.22E-106494IPR004333Transcription factor, SBP-box
PfamPF031102.7E-86591IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVILHSGIGT CTAVMMVVVT FQRATIRERG GVMEELRVGV AGARKRRRLG WFRGVRWRGA  60
TWRWFHVVSE FDDSKRSCRR RLAGHNERRR KSSHLSVTRS SRQGKNNTIH YISQLRYKEK  120
QPMRWIGCAL SLLSFGSSDA DLSTRCSAAL LELIAENRAA LMTRQQEEHV YVVGHHDDDA  180
VDEEEQEFVE SNYFPQHMFF QTQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14347RKRRR
24448KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150423e-76AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515428.14e-72PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A0L9VUB93e-59A0A0L9VUB9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SVE03e-59A0A0S3SVE0_PHAAN; Uncharacterized protein
STRINGGLYMA07G14641.14e-42(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96132738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-11squamosa promoter binding protein-like 3